Dear bb members,
My question from yesterday is repeated at the bottom of this email.
What worked is the suggestion by Jan Dohnalek (IBT and CMS, BIOCEV Vestec):
opening a structure file in CCP4MG with the option "interfaces" then
selecting "residues". A simplified display of the proteins appears with
the residues involved in the interface. This is followed by a PISA
calculation from within CCP4MG. The surface of only one of the
components in the p-p-i can be displayed, which is exactly what I was
looking for.
Thanks for all the suggestions.
Regards,
Fred.
On 5/31/22 08:12, Fred Vellieux wrote:
Dear bb members,
I am quite certain that someone must have needed to do this already. I
looked at publications but no details were given concerning how
figures were prepared.
So here is the problem:
Given a protein protein interface (with the 3D structure of the
complex available) I am looking for a method allowing me to identify
and display the interface forming residues of one of the protein
components. Plus a surface representation of that part, for the 3D
structure.
Thanks in advance for any tips.
Regards,
Fred. Vellieux
--
MedChem, 1st F. Medicine, Charles University
BIOCEV, Vestec, Czech Republic
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