On 27/05/2022 19:22, Jan Abendroth wrote:
Hi all,
not sure if this appropriate for this BB, since right at the interface between CCP4, Coot and Phenix.

I wonder if someone else also experiences these issues after upgrading to CCP4 8.0 (or 8.001) and with that to Coot 0.9.8.1. This happens both on OSX and windows.

  * coot /mydata/.pdb /mydata/.mtz

coot --pdb mydata.pdb --auto mydata.mtz

I removed the globbed data files for style reasons (Bernhard didn't think that was a good idea).

  * will only open up the PDB but ont the mtz file. The latter can be
    opened via the Load menu.

Yes.

  * The Coot window launched from the phenix gui does not displany the
    pdb or the map.


That doesn't sound good. I don't know what's going on there - I'd need to see the console log.


Paul.


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