Hello,
another one ..... http://bioinfo.ifm.liu.se/ProQ2/
Best regards
Jeroen
Am 20.12.21 um 17:39 schrieb Weidenhausen, Jonas:
Hi Reza,
Could you use MolProbity (also from within Phenix), which will give
you statistics about Ramachandran/rotamer outliers, clash score etc?
Besides, maybe ModFOLD? (https://www.reading.ac.uk/bioinf/ModFOLD/)
Which journal, if I may ask?
Best,
Jonas
--
Jonas Weidenhausen
PhD Student
AG Sinning
BZH Heidelberg University, room: 524
INF 328, 69120 Heidelberg
Phone: +49 6221 54-4786
jonas.weidenhau...@bzh.uni-heidelberg.de
On 20. Dec 2021, at 17:10, Reza Khayat <rkha...@ccny.cuny.edu> wrote:
Hi,
Can anyone suggest how to validate a predicted structure? Something
similar to wwPDB validation without the need for refinement
statistics. I realize this is a strange question given that the
geometry of the model is anticipated to be fine if the structure was
predicted by a server that minimizes the geometry to improve its
statistics. Nonetheless, the journal has asked me for such a report.
Thanks.
Best wishes,
Reza
Reza Khayat, PhD
Associate Professor
City College of New York
Department of Chemistry and Biochemistry
New York, NY 10031
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