Well I do this by overlapping one domain of protein A onto protein B - you can do that in coot - then overlap the second domain of the shifted A onto the second domain of B. The coot log file tells you omega phi kappa applied and kappa is your angle of interest... is that clear enough - I could give more detail.. The worst problem is finding the coot log file but if you are using I2 it is available in the job directory.. Eleanor On Fri, 12 Nov 2021 at 19:37, Ishan Rathore <[email protected]> wrote:
> Hi Kyle > > I have used this pymol plugin to measure the angle between domains > > https://pymolwiki.org/index.php/Angle_between_domains > > Regards > Ishan > > > On Sat, Nov 13, 2021, 12:35 AM Kyle Gregory < > [email protected]> wrote: > >> Dear CCP4 bulletin board, >> >> I have two domains connected by a helix and I want to measure tilt angles >> between domains, for comparison purposes to other structures of the same >> protein. >> >> Does anyone have any tools they'd recommend? >> >> Kind regards, >> Kyle >> >> >> >> ------------------------------ >> >> To unsubscribe from the CCP4BB list, click the following link: >> https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 >> > > ------------------------------ > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 > ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
