ATTACHED SOME CORRESPONDENCE WITH David Lawson re these issues/. Eleanor On Tue, 31 Aug 2021 at 10:29, Robbie Joosten <[email protected]> wrote:
> Hi everyone, > > Thank you for the replies so far on and off list, they are really helpful. > Feel free to keep them coming. > > Cheers, > Robbie > > > -----Original Message----- > > From: CCP4 bulletin board <[email protected]> On Behalf Of Dirk > > Kostrewa > > Sent: Tuesday, August 31, 2021 10:24 > > To: [email protected] > > Subject: Re: [ccp4bb] Some questions on tools for CCP4i2cloud: pdbset, > > pdbcur, coordconv, sftools > > > > Dear Robbie, > > > > I use pdbset in scripts from time to time, mainly to generate symmetry > > equivalent copies. I use sftools on the command line more frequently, > > because it allows a lot of mathematical operations on data in mtz files. > > I also use sftools to produce lists of average data values against > > resolution (that I plot then with gnuplot). I can't recall having used > > coordconv at all. > > > > Best regards, > > > > Dirk. > > > > On 8/26/21 12:29 PM, Robbie Joosten wrote: > > > Dear CCP4 users, > > > > > > We (as in, the CCP4 developers) are investigating some (potentially) > > missing functionality in CCP4i2 and/or Cloud with respect to the programs > > pdbset, pdbcur, coordconv, and sftools. Some of these tools are quite old > > and may need to be replaced by other tools with similar functionality. > Could > > you answer a few questions: > > > > > > - Do you use any of these tools? > > > - If so, how often? (Few times a week, month, year, or less than once a > > year). > > > - Which functionality of program X do you use? > > > - Would you like a graphical interface to that functionality or are > you happy > > to use the command line? > > > > > > Personal example: > > > I use pdbset a few times a month, but only the "noise" function. I > don't > > need a graphical interface for it (because it is used in the context of > pdb- > > redo). I also use sftools, "reduce -> merge average" a few times a year. > Again, > > only from the command line. > > > > > > > > > Feel free to send your answers directly to me or to the bulletin board > if > > you want to start a discussion. Tips on alternative CCP4 tools to achieve > > similar effects are probably also interesting for other BB users. > > > > > > Cheers, > > > Robbie > > > > > > > > > > > > > > > > > ############################################################### > > ######### > > > > > > To unsubscribe from the CCP4BB list, click the following link: > > > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 > > > > > > This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a > > mailing list hosted by www.jiscmail.ac.uk, terms & conditions are > available at > > https://www.jiscmail.ac.uk/policyandsecurity/ > > > > -- > > > > ******************************************************* > > Dirk Kostrewa > > Gene Center Munich > > Department of Biochemistry, AG Hopfner > > Ludwig-Maximilians-Universität München > > Feodor-Lynen-Str. 25 > > D-81377 Munich > > Germany > > Phone: +49-89-2180-76845 > > Fax: +49-89-2180-76998 > > E-mail: [email protected] > > [email protected] > > WWW: www.genzentrum.lmu.de > > ******************************************************* > > > > ############################################################### > > ######### > > > > To unsubscribe from the CCP4BB list, click the following link: > > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 > > > > This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a > > mailing list hosted by www.jiscmail.ac.uk, terms & conditions are > available at > > https://www.jiscmail.ac.uk/policyandsecurity/ > > ######################################################################## > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 > > This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a > mailing list hosted by www.jiscmail.ac.uk, terms & conditions are > available at https://www.jiscmail.ac.uk/policyandsecurity/ > ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
DaveLawson.docx
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