Paul was a little too terse, perhaps. In script form peakmax MAPIN myfile.ccp4 XYZOUT myfiles_omit_atom.pdb << EOF-pmx keywords in here EOF-pmx
at least that's what works for me in Csh. Bash proselytizers will correct me as necessary... Phil Jeffrey Princeton ________________________________ From: CCP4 bulletin board <CCP4BB@JISCMAIL.AC.UK> on behalf of Mohamed Ibrahim <m.essam.ibra...@gmail.com> Sent: Tuesday, June 8, 2021 2:06 PM To: CCP4BB@JISCMAIL.AC.UK <CCP4BB@JISCMAIL.AC.UK> Subject: Re: [ccp4bb] Problem with peakmax Thanks Paul, Is it possible to add Ctrl-D to my bash script? Best regards, On Tue, Jun 8, 2021 at 8:03 PM Mohamed Ibrahim <mohamed.ibra...@hu-berlin.de<mailto:mohamed.ibra...@hu-berlin.de>> wrote: Thanks Paul, Is it possible to add Ctrl-D to my bash script? Best regards, On Tue, Jun 8, 2021 at 7:51 PM Paul Emsley <pems...@mrc-lmb.cam.ac.uk<mailto:pems...@mrc-lmb.cam.ac.uk>> wrote: On Tue, 2021-06-08 at 19:34 +0200, Mohamed Ibrahim wrote: > > I am trying to get the peak values from omit maps. The peakmax from the GUI > works fine. However, I tried to run > peakmax from the terminal, and it stuck when returning P1. Same map file > works fine, when I use the GUI. Any ideas, > how to solve this problem? > > command used > peakmax MAPIN "myfile.ccp4" XYZOUT "myfiles_omit_atom.pdb" > Ctrl-D ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB<http://www.jiscmail.ac.uk/CCP4BB>, a mailing list hosted by www.jiscmail.ac.uk<http://www.jiscmail.ac.uk>, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/ -- ---------------------------------- Dr. Mohamed Ibrahim Postdoctoral Researcher Humboldt University Berlin, Germany Tel: +49 30 209347931 -- ---------------------------------- Dr. Mohamed Ibrahim Postdoctoral Researcher Humboldt University Berlin, Germany Tel: +49 30 209347931 ________________________________ To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
