Hiya

*Half an hour in the library saves a month of research.* That's what my
late advisor Dr. Frolow used to say a lot and he was not wrong.

Erenpreisa J. 1981. Staining of DNA with uranlyacetate in hydrolyzed
ultrathin sections. Acta histochem 68(1): 22-26

there are several very clever methods, using depurination and various
chemical treatments (e.g. phenylhydrazine) followed by staining with
various heavy atoms (tungsten derivatives)

In general, shadowing with tungsten is a highly adequate method, see for
example gorgeous images of replicaiton forks here:

https://www.jbc.org/content/285/18/13349.full.pdf

Artem

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On Tue, Aug 4, 2020 at 7:11 AM Panne, Daniel (Prof.) <
daniel.pa...@leicester.ac.uk> wrote:

> Hi Meytal,
>
> 1. The concentration seems way too high at 254mg/ml. Typically 0.1-5mg/ml
> are used.
> 2. Uranyl ions react with phosphate groups resulting in positive stain.
> The resulting contrast is frequently poor.
> 3. Rotary shadowing can be used to enhance contrast.
>
> Best,
> Daniel
>
>
> On 4 Aug 2020, at 11:20, Marin van Heel <
> 0000057a89ab08a1-dmarc-requ...@jiscmail.ac.uk> wrote:
>
>
> Dear Meytal,
>
> Suggestion: Apply a strong high-pass filter to the images before visually
> judging them!
>
> Marin
>
> On Tue, Aug 4, 2020 at 3:50 AM Meytal Galilee <meytal.gali...@gmail.com>
> wrote:
>
>> Hi Arunabh Athreya,
>> Sure (this is the linear 2200 b.p. at 175uM)
>> <image.png>
>>
>>
>>
>> Get Outlook for Android
>> <https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Faka.ms%2Fghei36&data=02%7C01%7Cdaniel.panne%40leicester.ac.uk%7C1d84ebc5b8674ad1d62b08d838601d22%7Caebecd6a31d44b0195ce8274afe853d9%7C0%7C1%7C637321332736273265&sdata=1JpwGUyNpGCO3IlNY8y0eXKdGulww020ZzJLc93idfo%3D&reserved=0>
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>>
>> ------------------------------
>> *From:* Arunabh Athreya <arun...@iisc.ac.in>
>> *Sent:* Tuesday, August 4, 2020, 12:54
>> *To:* CCP4BB@JISCMAIL.AC.UK; Meytal Galilee
>> *Subject:* Re: Advice on DNA negative staining
>>
>> Hi Meytal
>>
>> Do you have an EM image snapped from your negative staining sample?
>>
>> Get Outlook for Android
>> <https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Faka.ms%2Fghei36&data=02%7C01%7Cdaniel.panne%40leicester.ac.uk%7C1d84ebc5b8674ad1d62b08d838601d22%7Caebecd6a31d44b0195ce8274afe853d9%7C0%7C1%7C637321332736273265&sdata=1JpwGUyNpGCO3IlNY8y0eXKdGulww020ZzJLc93idfo%3D&reserved=0>
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