Well - I use standard software. Use GESANT or some such program to fit Structure 2 A to Structure ! A only - output wilh have all A B C but only A has been fitted// Now fit Structure 2 B from fitted structure to Structur 1 B . It will give you a PHI CHI Kappa needed to rotate B2 to B1 Is that clear enough - I can send an example.. Eleanor
On Wed, 8 Jul 2020 at 18:09, kazi nasrin sultana <kazinasr...@gmail.com> wrote: > Hi, > > You can try elNemo server. > > > Regards, > Nasrin > PhD scholar > > > > > On Wed, Jul 8, 2020, 10:16 PM Antony Oliver <antony.oli...@sussex.ac.uk> > wrote: > >> Dear CCP4bb >> >> >> >> Is anyone kindly able to point me at a server or recommend software that >> might help me analyse relative domain movements – by comparison of two >> structures? >> >> >> >> Structure 1 has molecules A and B. >> >> Structure 2 has molecules A, B and C. >> >> >> >> I am interested in the induced movements, and a description thereof, that >> the presence of molecule C produces in molecules A and B. >> >> >> >> I am aware of DynDom – but I can’t seem to make it produce a readily >> interpretable output (undoubtedly my fault). >> >> >> >> Many thanks for your help in advance. >> >> >> >> Antony. >> >> >> >> >> >> *Antony W Oliver* FHEA, PhD >> Faculty Senior Research Fellow >> >> Genome Damage and Stability Centre >> Science Park Road >> University of Sussex >> Falmer, Brighton, BN1 9RQ >> >> >> >> >> >> >> >> (office): +44 (0)1273 678349 >> (lab): +44 (0)1273 677512 >> >> >> >> >> *antony.oli...@sussex.ac.uk <antony.oli...@sussex.ac.uk> * >> https://www.sussex.ac.uk/lifesci/oliverlab >> https://tinyurl.com/aw-oliver >> https://orcid.org/0000-0002-2912-8273 >> >> http://www.sussex.ac.uk/lifesci/internal/staff/support >> >> [image: A close up of a logo Description automatically generated] >> >> >> >> >> >> >> >> >> >> ------------------------------ >> >> To unsubscribe from the CCP4BB list, click the following link: >> https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 >> > > ------------------------------ > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 > ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
