Hi Robbie Many thanks. I should tell the owners of the prediction server that they’re writing non-compliant files, in that case.
So “BIDEN” is not compliant but “TRUMP” is? He’d like that… H > On 29 May 2020, at 16:02, Robbie Joosten <robbie_joos...@hotmail.com> wrote: > > Hi Harry, > > You need this: > http://www.wwpdb.org/documentation/file-format-content/format33/sect9.html#MODEL > > Essentially you have to make sure a MODEL has a number and a closing tag. It > is read as a real PDB record so you have to make sure it is correct BIDEN is > not PDB compliant and will be either ignored or a parser will throw an error. > > Cheers, > Robbie > >> -----Original Message----- >> From: CCP4 bulletin board <CCP4BB@JISCMAIL.AC.UK> On Behalf Of Harry >> Powell - CCP4BB >> Sent: Friday, May 29, 2020 16:57 >> To: CCP4BB@JISCMAIL.AC.UK >> Subject: [ccp4bb] PDB file header lines... >> >> Hi >> >> Is there something about “MODEL ” lines (i.e. five characters followed by a >> space) in PDB files that is completely beyond the pale? >> >> I’ve got some PDB files from a protein structure prediction server based in >> the US that Coot fails to read and that cause QTMG to crash on my Mac. I’ve >> tracked this down to “MODEL” lines in the file headers. >> >> I’ve tested this most in QTMG, so the following may not be true for Coot. If >> I >> change this line so that it has “M ”, “MO ”, “MOD ”, MODE ”, “MODEL1 ”, >> “MODEL22 ”, “MODEL678 ” or even “MODEL^&* ” instead of “MODEL ” then >> all looks hunky-dory. >> >> I thought - “aha - there’s something about 5 characters” - so I tried >> replacing >> “MODEL ” with “TRUMP ” and “BIDEN ” and the files read okay, so it does >> look very specific. >> >> I’m sure there’s a simple answer to this (is there a “FM” I could read?), >> but I >> haven’t found one yet. Can anyone on the BB help out? >> >> Harry >> >> ############################################################### >> ######### >> >> To unsubscribe from the CCP4BB list, click the following link: >> https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1 >> >> This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a >> mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available >> at >> https://www.jiscmail.ac.uk/policyandsecurity/ ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
