I had a similar problem with the beta. Do the different systems have
different processor manufacturers? At that point, a couple of weeks
ago, the relevant code then ran fine on Intel processors, but crashed
on AMD. However, this was part of the CCP4Cloud software, I2 seemed to
work fine after some limited testing.
Andy
Quoting Edward Lowe <edward.l...@bioch.ox.ac.uk>:
I have also experienced the exact problem below on trying to launch
ccp4i2 - but only on one of the four Ubuntu systems I have installed
ccp4-7.1 on.
Running CCP4i2 browser from: /home/rob/CCP4/ccp4-7.1/share/ccp4i2
Python 2.7.16 (default, Apr 22 2020, 09:15:14)
[GCC 4.9.1 20140922 (Red Hat 4.9.1-10)]
Qt version 4.8.7
Illegal instruction
Then, back to the prompt.
Dr. E.D. Lowe
edward.l...@bioch.ox.ac.uk<mailto:edward.l...@bioch.ox.ac.uk>
Department of Biochemistry Tel: ++44 (0)1865 275392
University of Oxford
Oxford UK, OX1 3QU
From: CCP4 bulletin board <CCP4BB@JISCMAIL.AC.UK> On Behalf Of
Robert S Phillips
Sent: 24 April 2020 14:01
To: CCP4BB@JISCMAIL.AC.UK
Subject: [ccp4bb] CCP4 7.1 problems
I installed CCP4 7.1 yesterday, and I have problems. On an Ubuntu
18.04 LTS system, I get the following:
rob@rob-SA76R4:~$ ccp4i2
Running CCP4i2 browser from: /home/rob/CCP4/ccp4-7.1/share/ccp4i2
Python 2.7.16 (default, Apr 22 2020, 09:15:14)
[GCC 4.9.1 20140922 (Red Hat 4.9.1-10)]
Qt version 4.8.7
Illegal instruction
Then, back to the prompt.
Similarly, with COOT:
rob@rob-SA76R4:~$ coot
INFO:: Reading coordinate file:
/home/rob/CCP4/ccp4-7.1/share/coot/standard-residues.pdb
INFO:: file /home/rob/CCP4/ccp4-7.1/share/coot/standard-residues.pdb
has been read.
Spacegroup: P 1
/home/rob/CCP4/ccp4-7.1/bin/coot: line 333: 13382 Illegal
instruction $coot_bin "$@"
;;; note: source file
/home/rob/CCP4/ccp4-7.1/share/guile/1.8/ice-9/boot-9.scm
;;; newer than compiled
/usr/lib/x86_64-linux-gnu/guile/2.2/ccache/ice-9/boot-9.go
Uncaught exception:
Throw to key syntax-error with args ("memoization" "In file ~S, line
~S: ~A ~S." ("/home/rob/CCP4/cc
p4-7.1/share/guile/1.8/ice-9/boot-9.scm" 103 "Bad define placement"
(define (syntax) (error "syntax
error in eval-case"))) #f)
I upgraded the system to Ubuntu 20.04 LTS (also released yesterday),
and have the same problems.
However, ccp4i starts normally.
Rob
Robert S. Phillips
Professor of Chemistry and of Biochemistry and Molecular Biology
University of Georgia
Athens, GA 30602
Phone: (706) 542-1996
Fax: (706) 542-9454
E-mail: rsphill...@chem.uga.edu<mailto:rsphill...@chem.uga.edu>
Web:
http://tryptophan.net<https://pod51004.outlook.com/owa/redir.aspx?C=ccbf42ffea5f48b1bf8e9bb950454bab&URL=http%3a%2f%2ftryptophan.net>
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