Hi Joël, You can go to Calculate -> Scripting -> Python and enter:
set_draw_cis_peptide_markups(0) Kind regards, Paul On Thu, 12 Mar 2020 at 09:58, Joël Bloch <joel_...@hotmail.de> wrote: > Hi Dave > > Thanks a lot for the hint. The Cis-bond should be correct, as it is a > buried glycine residue in a crystal structure at 0.95 Å resolution. > > But it would be great, if there would be a way to simply hide the cis-bond > warning. I would like to generate a supplementary figure with a broad view > at active site electron density, which in this particular case looks much > clearer in Coot than in PyMol > > Best wishes, > Joël > > On 12 Mar 2020, at 10:34, David Briggs <david.bri...@crick.ac.uk> wrote: > > > Hi Joel, > > The red trapezoids are indicative of cis-peptide bonds that are > exceptionally rare, and usually indicate incorrect tracing of the backbone > (unless you have good enough data to unambiguously decide that a > cis-peptide bond is correct). > > I'm afraid I don't know how to get rid of them, other than correcting the > backbone. > > There is a Cis<>Trans button you can add to coot which might correct the > issue for you (right-click on the icon bar, select "Manage Buttons", and > add the appropriate button) > > HTH > > Dave > > -- > > Dr David C. Briggs > > Senior Laboratory Research Scientist > > Signalling and Structural Biology Lab > > The Francis Crick Institute > > London, UK > > == > > about.me/david_briggs > > ------------------------------ > *From:* CCP4 bulletin board <CCP4BB@JISCMAIL.AC.UK> on behalf of Joël > Bloch <joel_...@hotmail.de> > *Sent:* 12 March 2020 09:14 > *To:* CCP4BB@JISCMAIL.AC.UK <CCP4BB@JISCMAIL.AC.UK> > *Subject:* [ccp4bb] Red trapezoids in Coot > > Dear CCP4 community, > > Is there any way in Coot 0.8.9.2 to remove/hide the red trapezoids that > are indicating planar bonds? > > I couldn’t find anything on that, neither in the manual nor FAQ. > > Thanks a lot for your help! > > Best wishes, > Joël > > ######################################################################## > > To unsubscribe from the CCP4BB list, click the following link: > > https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.jiscmail.ac.uk%2Fcgi-bin%2Fwebadmin%3FSUBED1%3DCCP4BB%26A%3D1&data=02%7C01%7C%7C5f83fa21c789422339b408d7c6676029%7C4eed7807ebad415aa7a99170947f4eae%7C0%7C1%7C637196019617460410&sdata=suEVs%2BAbwYkXyo1W8C14kWP70duWVWZSnEVB23exFek%3D&reserved=0 > > The Francis Crick Institute Limited is a registered charity in England and > Wales no. 1140062 and a company registered in England and Wales no. > 06885462, with its registered office at 1 Midland Road London NW1 1AT > > > ------------------------------ > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1 > ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1
