Dear Lei
You can use ASSAM for this http://27.126.156.175/assam/ https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3394286/ In the past I've also used SPASM locally for this http://xray.bmc.uu.se/usf/spasm.html but I think you'll need to generate your own up to date database to search. Best wishes Dan ________________________________ From: CCP4 bulletin board <CCP4BB@JISCMAIL.AC.UK> on behalf of Zheng, Lei <lei.zh...@uth.tmc.edu> Sent: 08 January 2020 15:57:23 To: CCP4BB@JISCMAIL.AC.UK Subject: [ccp4bb] Searching similar local structural conformations Dear CCP4ers, We identify a potential ion binding site formed by four residues in a structure. I want to search if any other structures have a similar local residual geometry. Is there any programs to perform such a searching? For example, to search in Protein Data Bank using coordinates of the binding site residues? I appreciate your suggestions. Happy New Year! Lei ________________________________ To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1 ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1
