Being denied a job because someone else published your research may make the 
dance also somewhat less happy…

Herman


Von: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] Im Auftrag von Mark J 
van Raaij
Gesendet: Mittwoch, 21. August 2019 11:48
An: CCP4BB@JISCMAIL.AC.UK
Betreff: [EXTERNAL] Re: [ccp4bb] not solely pdb issue: need someone to 
officially settle the pdb dispute


EXTERNAL : Real sender is owner-ccp...@jiscmail.ac.uk

Another problem is that the structure was apparently originally not cited 
properly, and now still cited as work from the lab of B, rather than as work of 
A...

Mark J van Raaij
Dpto de Estructura de Macromoleculas
Centro Nacional de Biotecnologia - CSIC
calle Darwin 3
E-28049 Madrid, Spain
tel. (+34) 91 585 4616

On 21 Aug 2019, at 11:22, Anastassis Perrakis 
<a.perra...@nki.nl<mailto:a.perra...@nki.nl>> wrote:

If the structure has been deposited in the PDB and thus is public ally 
available, B (or F, G, Φ, Ξ, Δ, Α or whoever else) has every right to use it in 
a publication.

“A” should follow the advice of Frank and do a happy dance for the usefulness 
of the work, or if not feeling like dancing she/he could follow my advice that 
will be offered in Greek: «ξυδάκι».
Sent from my iPhone

On 21 Aug 2019, at 11:13, Flemming Goery 
<flemming_go...@hotmail.com<mailto:flemming_go...@hotmail.com>> wrote:
Dear all:
A has sought a job in the lab of B. B invited A for a interview with a PPT oral 
presentation, as requested B has sent the PPT on the structural biology 
research of XXX to B by e-mail, and presented in front of A and his 
postdoctoral researcher.

After interview, B requested all research documents (including detailed 
reports) on XXX to be sent by A to B by e-mail, A sent, including 2 sets of pdb 
for the same structure, one set with solvent, one without. A told B all 
intellectual property of the Documents and the research belonged to A, based on 
the regulation of A's institute.

B sought a referee from A's institute, to someone A did not agree. It seems the 
referee told B one set of PDB has been deposited (the one without solvent)

Then B did not give the offer to A. A joined Institute D, without independent 
funding for the writing (in fact, no salary to support this writing, and no fee 
for publication of this work).

Several years later, A found B's paper, i.e., the concerned paper published in 
Journal C. In the paper, B has used the information from deposited PDB for 9 
times (already a significant paprt of the paper, not to say the message from 
the other Documents sent to B by A). In the paper, it write something like, 
'based on our work on the structure of  (folowed by 4 letter pdb code)', which 
implied the structure was solved by the authors of the paper, rather than by A.

A contacted Journal C, Journal C contacted B, B claimed the deposited PDB was a 
public domain knowldge. Journal C took the action to add the reference to the 
deposited pdb in the paper.

As mentioned, the paper has mentioned and used the message from the deposited 
pdb 9 times, and in the paper the reference mark was not added to the first 
occurence of the mentioning of the deposited pdb, but added (only once for the 
9 occurences of depositation code) to a paragraph where it can be concluded 
that the authors have used the undeposited pdb with the solvent. In another 
words, although reference to the deposited pdb was added by a correction, from 
where the reference mark was added, it cannot show they have refered to the 
cited pdb, not to say the undeposited pdb with solvent which they used based on 
the paragraph information.

A's concern was that: A cannot exclude the possibility that the research in the 
paper other the part related to PDB, were fabricated, thus A request paper 
retraction as the major clain.

If cannot retratcted, A request to be the correspondence author (sometimes 
requets co-first author, sometimes request both co-first author and 
co-correspondence author), as without A's work (the PPT presentation, 2 sets of 
pdb, all documents), the work in the concerned paper cannot be done. A regard 
as having contributed to the initiation of the paper, thus A prefer to be add 
as a co-correspondence author if appropriate.

First, can the paper deserve a retraction, and second, can B deserve a 
co-author?

Flemming


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