Cannot you use COOT in expert mode, and give the F and Phi you have? Eleanor
On Tue, 20 Aug 2019 at 15:45, Jonathan Cooper < [email protected]> wrote: > Sorry, it's mapmask, not extend anymore. > > Sent from Yahoo Mail on Android > <https://go.onelink.me/107872968?pid=InProduct&c=Global_Internal_YGrowth_AndroidEmailSig__AndroidUsers&af_wl=ym&af_sub1=Internal&af_sub2=Global_YGrowth&af_sub3=EmailSignature> > > On Tue, 20 Aug 2019 at 15:28, Jonathan Cooper > <[email protected]> wrote: > You should be able to make a map with FFT by assigning F1 to your Fcalc > and PHI to your Phicalc, if not with the gui, then certainly with the > command line. You will need to make it cover your coordinates by ticking a > gui option or running extend in the command line. > > Sent from Yahoo Mail on Android > <https://go.onelink.me/107872968?pid=InProduct&c=Global_Internal_YGrowth_AndroidEmailSig__AndroidUsers&af_wl=ym&af_sub1=Internal&af_sub2=Global_YGrowth&af_sub3=EmailSignature> > > On Tue, 20 Aug 2019 at 15:02, Vijayakumar Rajendran > <[email protected]> wrote: > Dear All, > I have a problem in viewing electron density map by opening .mtz file in > coot. Actually I have a PDB cordinates of water molecules of my protein > using Hollow program. I generated the .mtz file using SFall program in > CCP4i by providing the cryst card. The generated mtz file contains FCalc > and PhiCalc. When I open this mtz file in coot along with the hollow pdb > file, I am not getting the electron density. > I tried running FFT, but it failed as it doesn't have SIGFP and FOM > column since its a non experimental co-ordinates. > Please help me where is the issue. > > Thanks in advance. > > --- > Dr. R. Vijayakumar, > Research Associate, > Molecular Biophysics Unit, > Indian Institute of Science, > Bangalore 560 012 > > ------------------------------ > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1 > > > ------------------------------ > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1 > > > ------------------------------ > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1 > ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1
