On Fri, Feb 01, 2019 at 03:00:09PM +0000, Eleanor Dodson wrote: > Mlphare still exists! It gives you all that information...
Indeed ... or SHARP ;-) I must say I stopped looking at R-Cullis/R-Kraut values a long time ago (maybe I still should), but found phasing power immensely useful - much more than FOM. Of course, if you used program A to get those SIRAS phases at the time you should only report statistics as given by that program. Maybe Phenix has those stats "somewhere": asking the phenixBB? I would be surprised if it doesn't compute phasing power, but maybe it doesn't. If the stats aren't there then this is just what it is. Re-running a different program B to get statistics is rather confusing: the resulting phases could be worse (and stats misleadingly poor) ... or of course could be much better. But then: some better phasing might give you nice stats for reporting - but it wasn't what actually happened at the time. It might be ok to convince a referee, but should probably not be put into a deposition/paper. > or just Argue that the map is good? Yes :-) Clemens > > On Fri, 1 Feb 2019 at 13:54, McCoy, Jason (mccoyj5) <mcco...@mail.uc.edu> > wrote: > > > Dear CCP4bb members, > > > > I am compiling a rebuttal for a manuscript that utilized experimental > > SIRAS phasing in order to generate coordinates that I could then use for > > molecular replacement. For phasing, I used phenix auto-sol and I was able > > to successfully generate a suitable model for MR on a native data set. > > However, a reviewer requested additional phasing statistics, such as the > > phasing power and Cullis-R. It appears phenix auto-sol does not produce > > these statistics. I have reported the FOM pre and post density > > modification. I am looking to generate additional phasing statistics for my > > reviewer. Do you have any recommendations? > > > > Thank you in advance, > > Jason McCoy > > > > ------------------------------ > > > > To unsubscribe from the CCP4BB list, click the following link: > > https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1 > > > > ######################################################################## > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1 -- *-------------------------------------------------------------- * Clemens Vonrhein, Ph.D. vonrhein AT GlobalPhasing DOT com * Global Phasing Ltd., Sheraton House, Castle Park * Cambridge CB3 0AX, UK www.globalphasing.com *-------------------------------------------------------------- ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1
