Dear Yu, I think pdb validation server add hydrogen to the structure and then calculate the clashscore. The other methods you mentioned calculate clashscore without adding hydrogen to the structure.
Regards Sharan On Tue, Jan 15, 2019, 11:23 PM Xiaodi Yu <uppsala....@hotmail.com wrote: > Hi All: > > I have a pdb file and the clashscores reported from both phenix and > MolProbity were around 5, while the clashscore from the pdb validation > server is 17. I wonder what may cause the difference? Any suggestion is > appreciated. > > Thank you. > > Xiaodi > > ------------------------------ > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1 > ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1
