On Thursday, January 3, 2019 12:40:05 PM PST Reza Khayat wrote:
> ?Hi,
>
>
> Happy new year to all! A bit of an off topic question. Does anyone know of
> a method/program to extract the most distinct "n" (n>2) sequences from a
> sequence alignment? Thanks.
If these putative "most distinct" sequences are hypothesized to belong
together, then i suggest K-means clustering. If they are hypothesized
to be unrelated individual outliers then I think you would just take the
worst scores using whatever metric you used to create original alignment.
Ethan
>
>
> Best wishes,
> Reza
>
>
> Reza Khayat, PhD
> Assistant Professor
> City College of New York
> Department of Chemistry
> New York, NY 10031
>
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--
Ethan A Merritt
Biomolecular Structure Center, K-428 Health Sciences Bldg
MS 357742, University of Washington, Seattle 98195-7742
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