Assuming you have a good reason for this, you can apply any arbitrary
transform fairly straightforwardly in ChimeraX. In the console
(Tools/General/Shell), and assuming your model is the only one loaded:
m = session.models.list()[0]
import numpy
transform_matrix = numpy.array([[r11, r12, r13, tx], [r21, r22, r23,
ty], [r31, r32, r33, tz]])
from chimerax.core.geometry import Place
transform = Place(matrix=transform_matrix)
m.atoms.coords = transform.moved(m.atoms.coords)
... which could of course be extended into a script to loop over many
models/transforms with a bit more work.
Hope this helps,
Tristan
On 2018-03-12 10:24, Phil Evans wrote:
The command ROTATE in pdbset should allow to apply any valid rotation
matrix, ie determinant = +1.0
Anything else will distort the coordinates
On 12 Mar 2018, at 10:13, Franck Coste <franck.co...@cnrs-orleans.fr>
wrote:
Hi all,
I'd like to apply an improper rotation matrix to PDB files but it
seems it's not allowed in pdbset. Does anyone know a program where I
could do this ?
Thanks in advance.
Regards,
Franck.
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