On 16/11/2017 13:28, Edward A. Berry wrote:
(set-go-to-atom-molecule 0)
(set-go-to-atom-chain-residue-atom-name "B" 42 " CA ")

Would those be also on the command line, or where?

You can use them on the command line like this:

coot --pdb input.pdb -c '(set-go-to-atom-molecule 0)(set-go-to-atom-chain-residue-atom-name 
"B" 42 " CA ")'

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