Dear Chetan
You could use PDBe's fold program (pdbe.org/fold) - this allows you to
check the fold in your coordinates against the whole PDB archive.
John
On 18/09/2017 17:21, Chetan Arya wrote:
Hi all,
I want to know if there is any server/software which does the PDB based
(structure based) fold recognition. All I got for fold prediction are
sequence based. I am asking this because what if I have a novel sequence
and I got the crystal structure of that protein but I don't know what
kind of fold this protein has. Will it be novel fold or not?
Thanks in advance.
Cheers
Chetan Arya
Instem, Bengaluru
--
John Berrisford
PDBe
European Bioinformatics Institute (EMBL-EBI)
European Molecular Biology Laboratory
Wellcome Trust Genome Campus
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Cambridge CB10 1SD UK
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