Hello Rohit,
did you inspect the structure and map in Coot ; are the outliers really
outliers, are other orientations possible?
In Coot there are several options, e.g.
- under Extensions -> all molecule-> Fit protein, step refine or
optimize Ramachandran
- using the icons on the right side of the screen you can manually
adapting/changing rotamers to pulling/moving residues & side chains,..
On the web there are great manuals
(e.g.
https://www2.mrc-lmb.cam.ac.uk/Personal/pemsley/coot/web/docs/coot.html)
& tutorials (e.g.
http://www.mrc-lmb.cam.ac.uk/rlw/text/coot_tutorial_revised.pdf)
Good luck,
Ruud
On 4/9/17 09:36, rohit kumar wrote:
Dear All,
Could anyone help me, how I can fix my sidechain outliers or
clashscore in coot or in CCP4 tools.
Or by using any online severs.
Its urgent
Thank You in advance
--
WITH REGARDS
Dr. Rohit Kumar Singh
School of Life Sciences,
Jawaharlal Nehru University
New Delhi -110067
--
Ruud Hovius
EPFL SB ISIC LIP
BCH 4209
CH-1015 Lausanne
+41-21-693-9442
http://lip.epfl.ch
