the CCP4 gui does just that - provides map coeffs by default.. You can seek out the full REFMAC output if needed but it is not there by default. Eleanor
On 3 August 2017 at 02:04, Pavel Afonine <pafon...@gmail.com> wrote: > Hi Ed, > > your suggestion makes perfect sense to me, and it's trivial to add an > option to do what you want. This will be available in next Phenix nightly > build (clearly not tomorrow given today's power outage). > > Command line: use "write_map_coefficients_only=True" (by default is is > False). > > Refinement GUI: Configure -> Output -> Other options -> tick "Write map > coefficients only" box. > > Pavel > > > On Wed, Aug 2, 2017 at 1:12 PM, Edwin Pozharski <pozharsk...@gmail.com> > wrote: > >> >> Just to clarify, how do you use the extra columns in this scenario? My >> suggestion was to have the output file that includes only the map >> coefficient columns, so you still can look at the map. IIRC, FP/SIGFP >> columns from refmac output are actually modified from the input (scaled >> with Boverall), so it was not recommended to use refmac output as input of >> any kind. >> >> Also, to provide context, my comment resulted from dealing with a large >> chunk of data that included ~200 output mtz files - which is Gb-sized >> tarball that had to be uploaded/downloaded. Not the end of the world, but >> cutting it in half seemed like a good idea at the time. :) Not hard to >> script that, of course. >> >> I am not necessarily advocating for skinny files to be the default, but >> as it stands, refmac/buster/phenix do not even provide the option of doing >> it (It's entirely possible that I am wrong here on specifics and will get >> corrected by Garib, Gerard and Pavel). >> >> Cheers, >> >> Ed. >> >> Edwin Pozharski, PhD, Assistant Professor >> University of Maryland, Baltimore >> ---------------------------------------------- >> When the Way is forgotten duty and justice appear; >> Then knowledge and wisdom are born along with hypocrisy. >> When harmonious relationships dissolve then respect and devotion arise; >> When a nation falls to chaos then loyalty and patriotism are born. >> ------------------------------ / Lao Tse / >> >> >
