I am not experienced with pymol. However if you are familiarized with coot,
you can mutate and set rotamer. It is really simple.

On 12-Apr-2017 12:15 AM, "Alex Lee" <alexlee198...@gmail.com> wrote:

> Dear All,
>
> I am using MacPymol 1.8.6, I did Pymol point mutagenesis using Wizard,
> everytime after I choose a residue for mutation, choosing a mutated target
> residue and a rotamer and click apply, the text of the sequence on top of
> the main window shows my selected residue is mutated but the graphics in th
> main window shows deletion of the residue (a broken empty space between
> flanking residues of the mutated residue).
>
> I do not know if any of you experience similar problems.
>
> Thanks for any input.
>

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