I am new to this, so forgive the perhaps naive question. Does anyone know why Coot is placing ligand outside the electron density where my model is built. I have put the cursor to where I want it to search, but when it fits, it places the ligand in the equivalent spot, but outside the model and not where the cursor was? I tried renaming the chains, but now it the find ligand doesn't even find anything even though there is clear density there. Thanks in advance.
Roger -- Roger Shek Stony Brook University Graduate Student in Biochemistry and Structural Biology (PhD) Stony Brook Integrative Structural Biology Organization <https://sbintstrbio.wordpress.com/> Cell: (808) 386-3879
