Thanks all for the help! Definitely, using: Extensions -> Modelling -> Replace Residue ... -> CSD -> Mutate was the easiest way to solve the problem of adding the sulfinic cysteine!
Thanks Renato *Renato Mateus Domingos* *PhD student at Departamento de Genética e Biologia Evolutiva* *Universidade de São Paulo, Brazil* *Phone: (+55)(11)30917590* On 12 March 2017 at 16:31, Paul Emsley <pems...@mrc-lmb.cam.ac.uk> wrote: > On 11/03/2017 17:37, Renato Mateus Domingos wrote: > >> Hi >> > > Hi. > > I add the sulfinic cysteine in my coordinate map, however I am strugling >> to make proper >> bonds between the aa chain of the protein and the sulfinic cysteine I >> added. the PDB does >> not recognize the modified cysteine I added as an amino acid. Any help >> please? >> > > This is not a very clear question (although my Portuguese is not greatest > :)) > > You mean SH -> S(=O)O[H] ? > > If so, I think that you want to replace your CYS with a CSD > > If you're using Coot: > > 1) centre on the CYS of interest > > 2 ) Extensions -> Modelling -> Replace Residue ... -> CSD -> Mutate > > > Paul. > >
