Yamei
You should ask questions about Phenix on the PhenixBB
http://www.phenix-online.org/mailman/listinfo/phenixbb.
You problem arises because you also need to supply the data_link.cif (most
likely file name).
Contact me directly if you need more help.
Cheers
Nigel
---
Nigel W. Moriarty
Building 64R0246B, Physical Biosciences Division
Lawrence Berkeley National Laboratory
Berkeley, CA 94720-8235
Phone : 510-486-5709 Email : nwmoria...@lbl.gov
Fax : 510-486-5909 Web : CCI.LBL.gov
On Sun, Jul 5, 2015 at 8:17 PM, yamei yu <ymyux...@163.com> wrote:
> Hi all,
>
> Recently I refine a structure with a small molecular covalently linked
> with it.
> I apply the cif file of the small molecule to the software (phenix.refine)
> and in the input file I add the link like this:
> apply_cif_link {
> data_link = "TAJ-ASP"
> residue_selection_1 = "chain G and resname TAJ and resid 1"
> residue_selection_2 = "chain B and resname ASP and resid 224ā€¯
>
> However, there was an error:
>
> apply_cif_link:
> data_link: TAJ-ASP
>
> Sorry: Missing CIF link: data_link_TAJ-ASP
> Please check for spelling errors or specify the file name
> with the link as an additional argument.
>
> How could I solve this problem? Thank you so much!
>
> All the best!
>
>
> ************************************************
>
> Yamei Yu
>
> State Key Laboratory of Biotherapyļ¼¸Collaborative Innovation
> Center of Biotherapy,
> West China Hospital,
> Sichuan University,Chengdu,610041, P.R.China
> Tel: 15882013485
> Email: ymyux...@gmail.com
> ymyux...@163.com
> yamei...@scu.edu.cn
>
>
