Dear Gert, I just did that and I wonder how these structures end there !!! @ Sabine: I was talking about Ramachandran outliers. I had learnt that the number of Ramachandran outliers show be very few or none for low resolution structures.
On Thu, Apr 23, 2015 at 6:25 PM, Gert Bange < gert.ba...@synmikro.uni-marburg.de> wrote: > Dear Mishba, > > Just check density vs model by simply open 'Coot', > > Go to: 'File' -> 'Fetch PDB & Map using EDS' > > Type the pdb entry into the field - enjoy the densities. > > Best and god save the EDS, > > Gert > > > ----------------------------------------------------- > LOEWE Center for Synthetic Microbiology > AG Bange - Analysis of Metabolic Networks > Dr. Gert Bange > Hans-Meerwein-Strasse, C7 > 35043 Marburg, Germany > office: +49-6421-28-23361 > fax: +49-6421-28-24430 > web: www.synmikro.com/bange > ----------------------------------------------------- > LOEWE Center for Synthetic Microbiology > AG Bange - Analysis of Metabolic Networks > Dr. Gert Bange > Hans-Meerwein-Strasse, C7 > 35043 Marburg, Germany > office: +49-6421-28-23361 > fax: +49-6421-28-24430 > web: www.synmikro.com/bange > > > > Am 23.04.2015 um 18:03 schrieb Misbah ud Din Ahmad <misba.ah...@gmail.com > >: > > Dear crystallographers, > > The PDB entry > http://www.rcsb.org/pdb/explore.do?structureId=3BDN > has 16.5% Ramachandran outliers. When I opened this PDB file in coot and > checked for Ramachandran outliers, the results are: > In preffered region: 58.04% > In allowed regions: 19.78% > > *Outliers: 22.17% !!!!!!!!!* > > With an R-free of 37.4% at 3.9 A resolution, could you please tell me how > reliable this structure of Lambda repressor bound to DNA is? > > > Thanks > Misbha > > > > > > > > >
