As I'm sure you've also found, it's not simple to find one [easily accessible] program that examines and reports every type of interaction that might be of interest to you. So I'm sending in a reference to another web-based tool that I've found complementary to PISA and the others mentioned here. In particular, it calculates features like the gap volume, number of segments, and the secondary structure-type that dominates between two chains. The tool is called 2P2I Inspector, and can be found here http://2p2idb.cnrs-mrs.fr/2p2i_inspector.html along with other tools and databases that might also interest you.
Wishing you well, Emily Arturo Ph.D. program in Biochemistry, Drexel Univ College of Medicine Jaffe lab, Fox Chase Cancer Center Philadelphia, PA On Wed, Mar 11, 2015 at 1:24 PM, Tim <tim.schu...@rub.de> wrote: > Hi, > Molprobity is also a nice software to do this kind of analysis - if you use > it as implemented in phenix you also get good visualization in coot. > I also asked the pymol community to create an implementation for pymol, but > I did not follow if somebody took that up. > > Also this 'protein interactions calculation' server is very neat: > http://pic.mbu.iisc.ernet.in/ > > /Tim > > > On 10/03/15 11:25, Debasish Kumar Ghosh wrote: >> >> Dear All, >> >> Apologies for this little off-topic inquiry. I want to closely visualize >> the interacting residues in an multimeric protein complex to understand the >> nature of interactions. Is there any good software to give this information >> with good clarity. >> Any suggestion is highly appreciated. >> >> Thanks, >> Best !!! >> >> Debasish Kumar Ghosh >> >> CSIR- Junior Research Fellow (PhD Scholar) >> C/o: Dr. Akash Ranjan >> Computational and Functional Genomics Group >> Centre for DNA Fingerprinting and Diagnostics >> Hyderabad, INDIA >> >> Email(s): dkgh...@cdfd.org.in, dgho...@gmail.com >> Telephone: 0091-9088334375 (M), 0091-40-24749396 (Lab) >> Lab URL: >> http://www.cdfd.org.in/labpages/computational_functional_genomics.html >> >
