As for python I would rather use:
molecule_chooser_gui("Choose molecule for PISA assembly analysis",
lambda imol: pisa_assemblies(imol))
or
molecule_chooser_gui("Choose molecule for PISA interface analysis",
lambda imol: pisa_interfaces(imol))
The latter has a bug which causes the scripting window to freeze hence
the error. Starting the scripting window again solves this issue (not to
self: check and fix). So both functions (should) work.
Bernhard
Coot thinks that PISA version is < 1.06, although it's 2.0.2.
That coot extension (and many others) have two versions, one in Scheme
and one in Python. The latter works, but it's not in the menu. As a
workaround: Calculate > Scripting > Python and type:
molecule_chooser_gui("Choose molecule", pisa_interfaces)
and press Enter.
Or pisa_assemblies instead of pisa_interfaces, depending what you want.
BTW you can only issue one command in that little window,
the second one gives error:
File
"/home/wojdyr/ccp4/ccp4-6.5/lib/python2.7/site-packages/coot/coot_gui.py", line
125, in warning_event
tag1 = textbuffer.create_tag(foreground="red",weight=pango.WEIGHT_BOLD)
NameError: free variable 'textbuffer' referenced before assignment in enclosing
scope
Marcin
On Mon, Feb 09, 2015 at 05:20:41PM +0100, Maria Jose Sanchez Barrena wrote:
Dear all,
I am using Coot 0.8.1, that is part of the CCP4 version 6.1. When trying to run
PISA from Coot, after choosing the pdf file, I get the following message: “your
pisa version is too old. Need at least v1.06”. However, when running CCP4mg
(part of the same CCP4 package), I am able to run PISA and get these wonderful
interaction surfaces and so on…
I find all this quite difficult to understand…. Any suggestion about what´s
going on?
Many thanks in advance,
Maria José
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