[ccp4bb] השב: [ccp4bb] pdb2pqr generation

[Boaz Shaanan]

Hi, I don't recall having this problem with pdb2pqr through the apps link. Did you try it? If all fails I suggest that contact the apbs/pd2pqr support. They're very helpful. 

Boaz

-------- הודעה מקורית --------
מאת abhishek jamwal <jamwalabhis...@gmail.com>
תאריך: 09/12/2014 8:29 (GMT-05:00)
אל CCP4BB@JISCMAIL.AC.UK
נושא [ccp4bb] pdb2pqr generation

Dear All,

I wish to generate electrostatics surface cartoon for  a protein, which is a tetramer. 

I am using pdb to pqr server (http://nbcr-222.ucsd.edu/pdb2pqr_1.8/) to generate .pqr files as part of this process. 

I find that server is able to genetrate .pqr file contents, only when input pdb file contains a single chain (monomer), it is failing to do the same when I give it tetramer pdb co-ordinates, why is that ? and how can I generate a .pqr file for teramer...what other options do I have ?

many thanks in adavnce

abhishek