Dear BB, since some replies went off the board and some of you might get stuck with the same minor problem, here’s the solution to the XDSGUI issue when updating your Mac (in particular Xcode). Engin was spot on with his reply below.
Jürgen You might want to update the bulletin board, since the emails did not go to the list. Engin On 9/23/14 3:35 PM, Jurgen Bosch wrote: Thanks Engin, the collective wisdom of the CCP4BB helped again within 10 minutes of sending off my email (even though the timestamp says something different). Thanks - now I’m happy and can process some data. Jürgen ...................... Jürgen Bosch Johns Hopkins University Bloomberg School of Public Health Department of Biochemistry & Molecular Biology Johns Hopkins Malaria Research Institute 615 North Wolfe Street, W8708 Baltimore, MD 21205 Office: +1-410-614-4742<tel:%2B1-410-614-4742> Lab: +1-410-614-4894<tel:%2B1-410-614-4894> Fax: +1-410-955-2926<tel:%2B1-410-955-2926> http://lupo.jhsph.edu On Sep 23, 2014, at 4:27 PM, Engin Özkan <eoz...@uchicago.edu<mailto:eoz...@uchicago.edu>> wrote: Did you try to run Xcode after the Xcode update? It asks for a user agreement during startup and then re-installs commandline tools. Until I did that, gcc did not work. Engin On 9/23/14 3:19 PM, Jurgen Bosch wrote: Dear BB, can anybody reproduce the problem with XDSGUI on the very latest Mac OSX update (from this weekend). I am unable to run generate_XDS.INP with useful input parameters from the diffraction images. It might just be a permission think perhaps that Apple has introduced in the last software update that leads to this problem. These are the values it seems to have problems obtaining from the files - sure I can enter them manually but hey, it’s the 21st century and we ought to talk to the computer and get a structure. Thanks for any suggestions, Jürgen ORGX= XXX ORGY= XXX ! check these values with adxv ! DETECTOR_DISTANCE= XXX OSCILLATION_RANGE= XXX X-RAY_WAVELENGTH= XXX DETECTOR= XXX MINIMUM_VALID_PIXEL_VALUE=XXX OVERLOAD=XXX SENSOR_THICKNESS= 0 ! attention CCD detectors: for very high resolution (better than 1A) make sure to specify SILICON ! as about 32* what CORRECT.LP suggests (absorption of phosphor is much higher than that of silicon) NX= XXX NY= XXX QX= XXX QY= XXX ! to make CORRECT happy if frames are unavailable ...................... Jürgen Bosch Johns Hopkins University Bloomberg School of Public Health Department of Biochemistry & Molecular Biology Johns Hopkins Malaria Research Institute 615 North Wolfe Street, W8708 Baltimore, MD 21205 Office: +1-410-614-4742<tel:%2B1-410-614-4742> Lab: +1-410-614-4894<tel:%2B1-410-614-4894> Fax: +1-410-955-2926<tel:%2B1-410-955-2926> http://lupo.jhsph.edu<http://lupo.jhsph.edu/> -- Engin Özkan, Ph.D. Assistant Professor Dept of Biochemistry and Molecular Biology University of Chicago Phone: (773) 834-5498 http://ozkan.uchicago.edu<http://ozkan.uchicago.edu/>
