Hello all, I am trying to make a model of an oligosaccharide which contains several sugar monomers. I obtained the monomers from coot library and put them into the electron density. But I don't know how to make covalent bond between these monomers.
I tried to use PRODRG to generate a model and it gave me one big ligand consisting of several monomers. However, what I want is to have a chain contains several monomers, and each monomers acts like a residue. Any suggestions would be appreciated. Thank you very much, Leo