Dear Antony,
Have you try to use the option - parralel 1, to see what hapen. Maybe it's
problem with the parallelism option. If you try this option you force to use
only one core and i think you decrease your need in memory. If this solution
help, you probably have to check the xdsInput parameters controled by xia2 if
it's possible (i have not try at this time) .
Hope to help.
Nicolas
________________________________________
De : CCP4 bulletin board [CCP4BB@JISCMAIL.AC.UK] de la part de Antony Oliver
[antony.oli...@sussex.ac.uk]
Envoyé : lundi 19 mai 2014 14:37
À : CCP4BB@JISCMAIL.AC.UK
Objet : [ccp4bb] Xia2 / XDS issues
Dear CCP4-ers.
I am (trying) to use Xia2 (svn/Build 4599) to process some diffraction data.
However, I am coming across the following issue, which I don’t seem to be able
to solve...
-------------------- Integrating SWEEP1 --------------------
Status: error "[XDS] cannot allocate memory”
I have checked XDS, and I have the correct (64-bit version installed: VERSION
January 10, 2014 BUILT=20140307).
I also have set the parameter KMP_STACKSIZE to 8m, in my .bash_profile as
indicated in the XDS setup instructions.
I am running OS X Mavericks (10.9.3) / XQuartz 2.7.6.
I also have 16 GB of RAM installed.
Any help / suggestions would be very much appreciated.
Tony.
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Dr Antony W Oliver
Senior Research Fellow
CR-UK DNA Repair Enzymes Group
Genome Damage and Stability Centre
Science Park Road
University of Sussex
Falmer, Brighton, BN1 9RQ
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email: antony.oli...@sussex.ac.uk
tel (office): +44 (0)1273 678349
tel (lab): +44 (0)1273 677512
http://www.sussex.ac.uk/lifesci/oliverlab
http://tinyurl.com/aw-oliver
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