16-May-2014
Dear Patrick,
Proteopedia [http://proteopedia.org] uses exactly the same style for 
referencing published material.

Proteopedia allows for the easy insertion of Pubmed and DOI references by only 
requesting from the user to enter the Pubmed or DOI ids. We have extended the 
same software used in Wikipedia for the internal Proteopedia engine to, based 
on this reference ID, retrieve, format and insert the correctly formatted 
reference at the bottom of the page.

For example, type <ref>PMID 18673581</ref> or <ref>doi 10.1093/nar/gku213</ref> 
in the wikitext box and save the page. If you type the reference in this 
manner, the properly formatted reference will be created automatically at the 
bottom of the page (or wherever you place the necessary wikitext 
"<references/>").

See http://proteopedia.org/w/Help:Editing#Citing_Literature_References and 
Proteopedia pages for actual examples.
best regards,
Jaime & Joel

On 15May, 2014, at 13:48, Patrick Shaw Stewart 
<patr...@douglas.co.uk<mailto:patr...@douglas.co.uk>> wrote:


I may be missing something here, but I don't think you have to rebut anything.  
You simply report that someone else has rebutted it.  Along the lines of

Many scientists regard this published structure as unreliable since a 
misconduct investigation by the University of Alabama at Birmingham has 
concluded that it
was, "more likely than not", faked [1]

[1] http://www.nature.com/news/2009/091222/full/462970a.html





On 15 May 2014 18:00, Nat Echols 
<nathaniel.ech...@gmail.com<mailto:nathaniel.ech...@gmail.com>> wrote:
On Thu, May 15, 2014 at 9:53 AM, Patrick Shaw Stewart 
<patr...@douglas.co.uk<mailto:patr...@douglas.co.uk>> wrote:
It seems to me that the Wikipedia mechanism works wonderfully well.  One rule 
is that you can't make assertions yourself, only report pre-existing material 
that is attributable to a "reliable published source".

This rule would be a little problematic for annotating the PDB.  It requires a 
significant amount of effort to publish a peer-reviewed article or even just a 
letter to the editor, and none of us are being paid to write rebuttals to dodgy 
structures.

-Nat



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