Thank you all,
Once again the ccp4bb delivers.
F
On Apr 15, 2014, at 6:38 AM, T. Nakane <tn...@cam.ac.uk> wrote:
> Dear Francis,
>
> You can visualize SPOT.XDS with adxv.
>
> Since column 3 of SPOT.XDS is the image number of spot centroid,
> you can extract spots near frame 4 like this:
>
> awk '{if (int($3+0.5) == 4) print $1, $2;}' SPOT.XDS > spots_04.adx
>
> Then you can load "spots_04.adx" into adxv.
> (you must load the image into adxv before reading the spot list)
>
> Best regards,
>
> Takanori Nakane
>
> On 2014-04-15 10:30, Harry Powell wrote:
>> Hi Francis
>> At the risk of offending Wolfgang and Kay, why not try using other
>> software to index & visualize spots found on the images? Mosflm is the
>> one that comes to my mind straight away, but there are others that
>> could probably do the job...
>> It would certainly be possible to write a jiffy that would read a
>> SPOT.XDS and write it in Mosflm .spt format, which could then be read
>> directly into iMosflm.
>> On 15 Apr 2014, at 02:24, Francis Reyes wrote:
>>> Hi all,
>>> I'm trying to diagnose a tricky indexing issue and I suspect the
>>> spot picking is poor. Any jiffy's for analyzing the spot.xds file
>>> (prior to running IDXREF) ? (like an overlay onto the actual image)?
>>> Thanks,
>>> F
>>> ---------------------------------------------
>>> Francis E. Reyes PhD
>>> 215 UCB
>>> University of Colorado at Boulder
>>> ----------------------------------------------
>> Harry
>> --** note change of address **
>> Dr Harry Powell, MRC Laboratory of Molecular Biology, Francis Crick
>> Avenue, Cambridge Biomedical Campus, Cambridge CB2 0QH
>> Chairman of European Crystallographic Association SIG9
>> (Crystallographic Computing)
