Dear Uli, thanks for letting us know - this is a bug that just happens in the CCP4i interface. If you use the command line, everything works fine. Here is an example how to use arp-solvent on the command line:
# auto_solvent.sh datafile xxx.mtz protein xxx_start.pdb freelabin FREE We also just fixed the bug in the CCP4i interface, this will either come to you via the CCP4i updater or a near-future ARP/wARP patch ;) Cheers, Tim On 31 Jan 2014, at 09:30, ulrich.goh...@mdc-berlin.de <ulrich.goh...@mdc-berlin.de> wrote: > Dear Arp/wArp developers, > > there seems to be a bug in the latest version of Arp/wArp Solvent (7.4 patch > 1) shipped with ccp4 v 6.4.0: despite ticking the box "For REFMAC 5 > refinement do USE the Free R flag", the log file shows the message "FreeR > will not be used" (and it clearly doesn't). > > Or am I missing something here? > > Cheers, > > Uli > > --------------------------------------------------------------------------- > dr ulrich gohlke > staff scientist - macromolecular structure and interaction > max-delbrück-center for molecular medicine (mdc) > > +49 30 9406 - 2725 (w) > +49 30 9406 - 2548 (fax) > ulrich.goh...@mdc-berlin.de > > http://www.mdc-berlin.de/en/research/research_teams/macromolecular_structure_and_interaction/ __________________________________ Dr. Tim Wiegels Postdoc @ Lamzin Group, EMBL Hamburg __________________________________ EMBL Hamburg c/o DESY Notkestrasse 85 DE-22603 HAMBURG GERMANY Phone 0049 40 89902-184 Fax 0049 40 89902-149
