Qixu Cai
There is a service at the PDBe that allows you to plot a large number of
statistical relationships, and download and get data relating to this
analysis.
If you follow this link...
http://www.ebi.ac.uk/pdbe-as/pdbestatistics/
And select from the EDS Property : Wilson B-factor (it is some way down
this list)
Then select from the "second parameter" : resolution (at the top).
Click [Show Distribution]
This will show you a 2D distribution of B-factor based on Wilson
statistics and
resolution. You can clarify the plot by dragging the "max" scroll bar
in the plot
to the left, and you can select/download the data if you click on the plot.
This basically shows the same information as the png file from Nat
Echols, but
you can see there are many possible way at looking at the data from
here. I would
welcome any suggestions to improve this data representation.
Regards
Tom Oldfield
Dear all,
Could you please teach me any method to present the relationship
between resolution and B values of all the x-ray structures in Protein
Data Bank. Can the PDB statistics in RCSB do it?
Thank you very much!
Q. Cai
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