On 25 Oct 2012, at 00:45, Zhijie Li <zhijie...@utoronto.ca> wrote:

> This is especially useful when the program does not give you options on 
> residue ranges (for example, COOT SSM superpose).

It does but you need to use the function superpose-with-atom-selection from the 
scripting interface. The syntax is something like this:

(superpose-with-atom-selection 0 1 "A/52-64" "A/52-64" 0) 

Full explanation in the Coot manual here: 
http://www.biop.ox.ac.uk/coot/doc/coot/Secondary-Structure-Matching-_0028SSM_0029.html



Huw 

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