Hello Everyone, We are computationally averaging several homologous protein structures into a single structure. This of course will lead to a single protein structure that possesses poor biophysical characteristics of bond lengths, bond angles, steric hindrance, etc. Therefore, we will need a refinement program that is very rapid and that will restore optimal protein parameters upon input of a single PDB coordinate file. We are considering several programs such as Phenix and CNS and would appreciate any comments or opinions as to recommendations, advantages, and disadvantage for these, or other, programs. We will need to refine thousands of PDB files so speed is a significant consideration.
Thank you everyone for your input. Sincerely, Scott Foy s...@mail.umkc.edu
