sreetama das wrote:
Dear All, I have a PDB file which does not have the REMARKS cards 465 (for missing residues) and 470 (for missing atoms). This is not a deposited PDB file. Is there any program to figure out the missing residues and atoms (some programs complain about missing atoms) ? Or do I have to check in any particular file generated during the processing of the diffraction data? The S2C program from Prof. Dunbrack's Lab does not show any option of uploading pdb files (this solution was mentioned to a previous query on the BB). Thanks in advance, sreetama
I think if you generate SEQRES records for the sequence of your protein (or grab them from another pdb if another structure has been deposited), add them to your raw pdb,
and submit to the validation server at the PDB, the validation report will include detailed listing of missing residues and missing atom in partial residues.
