When I index data, high resolution for example, I can get over 100,000 reflections. However, when I refine using PHENIX, it says only around 40,000. I am wondering why the number of reflections don't match up. I notice that the resolution range in PHENIX does not match that in HKL2000. I assumed the resolution range could be altered, but if it is using data from the indexing (output.sca file) I figured it would match. Can anybody explain why this is? It confuses me figuring out which number of reflections to use when writing tables. I normally use the number from the indexing file. Is this something related to default parameters in PHENIX?

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