Hi Anna, There has been some nice single crystal SAXS work done, check out J. Mol. Biol (1998) 284, 1439-1452 "Imaging RNA and Dynamic Protein Segments with Low-resolution Virus Crystallography: Experimental Design, Data Processing and Implications of Electron Density Maps" by Tsuruta et al. There is the capability to study single crystals on SAXS lines - in this case 4-2 at SSRL. However if you desperately need to use crystals, you may be better served with a single one by moving the beamstop back, choosing a lower energy and trying to collect all the low resolution diffraction information from a single crystal. You can truncate the high resolution data and see if you start to see information from the particles if there is some ordering. Even better if you can compare it from a crystal without them if it's in the same space group.
Have you thought about the possibility of anomalous SAXS with and without doped ferritin? Note that you may be inducing interparticle effects which will complicate the interpretation of any SAXS data, solution or suspended crystals. Cheers,, Eddie Edward Snell Ph.D. Assistant Prof. Department of Structural Biology, SUNY Buffalo, Senior Scientist, Hauptman-Woodward Medical Research Institute 700 Ellicott Street, Buffalo, NY 14203-1102 Phone: (716) 898 8631 Fax: (716) 898 8660 Skype: eddie.snell Email: esn...@hwi.buffalo.edu Telepathy: 42.2 GHz Heisenberg was probably here! From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of anna anna Sent: Monday, May 07, 2012 12:30 PM To: CCP4BB@JISCMAIL.AC.UK Subject: [ccp4bb] saxs on xtals Dear all, I'd like some suggestions/opinions about the sense of an experiment proposed by a collaborator expert in saxs. In few words, he wants to collect SAXS data on a suspension of protein xtals to investigate "low resolution periodicity" of the xtal (more details below). The experiment requires a very huge number of xtals to obtain the circles typical of saxs and it is very time-consuming to me (I know nothing about saxs, I have only to prepare the sample). I proposed to measure a single rotating xtal (like in XRD) but he told they don't have a goniometer on saxs beamline. Here is my concern: does it make sense to measure many xtals together? Don't we lose information with respect to single xtal? And, most of all, what can I see by saxs that I can't see by waxs?? Sorry for the almost off-topic question but I think that only someone who knows both the techniques can help me!! Some detail for who is intrigued by my story: we prepared doped magnetite nanoparticles using ferritin as bioreactor. I crystallized this spheres filled with metal and solved the structure at 3.7A but I can see only the protein shell while there is no density inside, even if I know that the nanoparticles are there. A simple explanation is that the particles are free to move in the cavity(note that the diameter of the nanoparticle is shorter then the inner diameter of the protein shell), ie are disordered, and do not contribute to diffraction, in fact, to my knowledge, nobody have ever seen the metal core inside ferritin or dps proteins. However, since they are magnetic particles they must "see" each other through the protein wall, ie they can't be completely free to move in the cavity. Maybe, but this is just my opinion, I don't see the particle because the "period of the particle" in the xtal is different/longer than the period of the protein shell. Anyway, we are interested in the relative distance between the magnetic particles in the xtal to study the effects of magnetostatic interactions in nanoparticles 3D arrays. We are going to do this by saxs since, they told me, lower resolution is useful in studying this long range periodicity (the diameter of ferritin is about 120A) but it seems fool to me using a suspension of so many xtals to obtain a scattering curve while I could collect diffraction images from a single xtal!!! I know that saxs is used when you don't have xtals but if you have xtals, ie your system is ordered, xtallography is much more powerful!! Another question: how can I handle my diffraction data at 3.7A resolution to "look for" nanoparticles? Should I try a lower symmetry? Maybe the anomalous signal? Have you any reference for a similar case? Thank you very much!! anna
