-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 Dear leo,
how do you mean 'not perfect'? Superposition is not too difficult a task once you have defined the atoms you want to superpose and there should not be much variation. You could fine-tune your result with lsqman (USF program suite) which allows to specify every single atom pair used in superposition. Cheers, Tim On 05/03/12 03:18, Junfeng Liu wrote: > Dear All, Does anybody has the experience to overlap DNA in the > protein complex? I have tried the LSQ in Coot and it works ok but > not perfectly. Could you please tell me a better way to do that?Or > can Coot be used to overlap DNA/RNA on their back bone by LSQ or > SSM ? At the same time, are there some software or servers can be > used to search the "homology DNA " in the database like the Dali > on protein? Thanks in advance! Best wishes leo > - -- - -- Dr Tim Gruene Institut fuer anorganische Chemie Tammannstr. 4 D-37077 Goettingen GPG Key ID = A46BEE1A -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.12 (GNU/Linux) Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org/ iD8DBQFPoj6lUxlJ7aRr7hoRAoOwAKCzSij01+u87eDYTIM39VK6tMrBSACcCcG5 NLAdemJUJDPTyq8AiSdONoA= =2/tN -----END PGP SIGNATURE-----
