Dipankar,

A little bit of cut-and-paste in a good text editor will sort that out fairly 
easily.

Tony.

Sent from my iPhone

On 14 Apr 2012, at 07:54, "Dipankar Manna" 
<[email protected]<mailto:[email protected]>> wrote:

Dear All,

I fitted a ligand into a structure along with SO4 and waters (COOT). Then I did 
the “Merge Molecules” and did the refinement. In output PDB file the chain ID 
sequence is showing B, A, C( ligand, protein and SO4 respectively) and the ATOM 
numbering is starting from ligand (Chain B instead of Chain A). How can I make 
the sequence A, B and C (Protein, ligand and SO4).

Best wishes

Dipankar

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