ESPript is a good option too: http://espript.ibcp.fr/ESPript/ESPript/
Good luck, Jon 2012/1/30 Florian Brückner <florian.brueck...@psi.ch> > Hi Sreetama, > > you can use STRAP for that: http://3d-alignment.eu/. It allows you to do > multible sequence alignments and use various algorithms to predict > secondary structure or display secondary structure assignments of PDB > entries. > > Cheers > > Florian > > > Am 30.01.2012 um 11:02 schrieb sreetama das: > > Dear All, > Is there any module in CCP4/ other related software/servers > which can show a multiple alignment of homologous sequences from a protein > family, together with their secondary structures? > Thanks in advance, > regards, > sreetama > > > ------------------------------------------------------------- > > Dr. Florian Brückner > Biomolecular Research Laboratory > OFLG/102 > Paul Scherrer Institut > CH-5232 Villigen PSI > Switzerland > > Tel.: +41-(0)56-310-2332 > Email: florian.brueck...@psi.ch > > > > > -- Dr. Jon Agirre Postdoctoral Scientist - Protein and Virus X-ray Crystallography Group Biophysics Unit (CSIC-UPV/EHU) +0034946013357
