-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 Hi ,
I could not find error messages but only some warnings. Why do you think anything goes wrong? I recommend you repost your scientific question at the very end again with a different thread as I guess that most readers will not have made it through to the end of your email. Best, Tim On 12/17/2011 02:19 AM, 王瑞 wrote: > I am sorry for a little off-topic! Could anyone tells me how to install > voidoo on 32-bits ubuntu11.10 ? > For its distribution kit on http://xray.bmc.uu.se/markh/usf/, I have > downloaded the distribution kit and Liniux_32_binaries executables, and > followed their tutorial, but something goes wrong: > > if ( != ) continue > if ( -d sod && -e sod/Makefile_linux ) then > echo Building sod > Building sod > cd sod > rm sod sod.o > cat Makefile_linux > # > OBJ= sod.o ../gklib/linux_kleylib ../ccp4libs_latest_m32_linux/libccp4f.a > ../ccp4libs_latest_m32_linux/libccp4c.a > EXEC = sod > INCL= Makefile_linux > SUBS = > STATIC = > ##SUBS## SUBS = sod_subs.o > INCL = Makefile_linux sod.incl > ##STATIC## STATIC = -static > > fc = gfortran -DLINUX -m32 > > opt= -O -u -ffixed-line-length-132 -I.. > link= -O > > $(EXEC): $(OBJ) $(SUBS) > $(fc) $(link) -o $(EXEC) $(SUBS) $(OBJ) $(STATIC) ; strip $(EXEC) > > sod.o: sod.fpp $(INCL) > $(fc) $(opt) -c sod.fpp > > ##SUBS## sod_subs.o: sod_subs.fpp $(INCL) > ##SUBS## $(fc) $(opt) -c sod_subs.fpp > make -f Makefile_linux > gfortran -DLINUX -m32 -O -u -ffixed-line-length-132 -I.. -c sod.fpp > gfortran -DLINUX -m32 -O -o sod sod.o ../gklib/linux_kleylib > ../ccp4libs_latest_m32_linux/libccp4f.a > ../ccp4libs_latest_m32_linux/libccp4c.a ; strip sod > cp sod /home/dell/Documents/usf/usf_export/bin > cd .. > endif > end > if ( != && != solex ) continue > if ( solex == gklib || solex == bin || solex == rave_package ) continue > set ccp4_flag = `echo $prog | grep ccp4` > grep ccp4 > echo solex > if ( != ) continue > if ( -d solex && -e solex/Makefile_linux ) then > echo Building solex > Building solex > cd solex > rm solex solex.o > cat Makefile_linux > # > OBJ= solex.o ../gklib/linux_kleylib > ../ccp4libs_latest_m32_linux/libccp4f.a > ../ccp4libs_latest_m32_linux/libccp4c.a > EXEC = solex > INCL= Makefile_linux > SUBS = > STATIC = > ##SUBS## SUBS = solex_subs.o > ##INCL## INCL = Makefile_linux solex.incl > ##STATIC## STATIC = -static > > fc = gfortran -DLINUX -m32 > > opt= -O -u -ffixed-line-length-132 -I.. > link= -O > > $(EXEC): $(OBJ) $(SUBS) > $(fc) $(link) -o $(EXEC) $(SUBS) $(OBJ) $(STATIC) ; strip $(EXEC) > > solex.o: solex.fpp $(INCL) > $(fc) $(opt) -c solex.fpp > > ##SUBS## solex_subs.o: solex_subs.fpp $(INCL) > ##SUBS## $(fc) $(opt) -c solex_subs.fpp > make -f Makefile_linux > gfortran -DLINUX -m32 -O -u -ffixed-line-length-132 -I.. -c solex.fpp > solex.fpp:71.24: > > call dosole (%val(iaptr),%val(ibptr),mapsize,masksize) > 1 > Warning: Type mismatch in argument 'mapa' at (1); passed INTEGER(4) to > REAL(4) > gfortran -DLINUX -m32 -O -o solex solex.o ../gklib/linux_kleylib > ../ccp4libs_latest_m32_linux/libccp4f.a > ../ccp4libs_latest_m32_linux/libccp4c.a ; strip solex > cp solex /home/dell/Documents/usf/usf_export/bin > cd .. > endif > end > if ( != && != spancsi ) continue > if ( spancsi == gklib || spancsi == bin || spancsi == rave_package ) > continue > set ccp4_flag = `echo $prog | grep ccp4` > grep ccp4 > echo spancsi > if ( != ) continue > if ( -d spancsi && -e spancsi/Makefile_linux ) then > echo Building spancsi > Building spancsi > cd spancsi > rm spancsi spancsi.o > cat Makefile_linux > # > OBJ= spancsi.o ../gklib/linux_kleylib > ../ccp4libs_latest_m32_linux/libccp4f.a > ../ccp4libs_latest_m32_linux/libccp4c.a > EXEC = spancsi > INCL= Makefile_linux > SUBS = > STATIC = > ##SUBS## SUBS = spancsi_subs.o > ##INCL## INCL = Makefile_linux spancsi.incl > ##STATIC## STATIC = -static > > fc = gfortran -DLINUX -m32 > > opt= -O -u -ffixed-line-length-132 -I.. > link= -O > > $(EXEC): $(OBJ) $(SUBS) > $(fc) $(link) -o $(EXEC) $(SUBS) $(OBJ) $(STATIC) ; strip $(EXEC) > > spancsi.o: spancsi.fpp $(INCL) > $(fc) $(opt) -c spancsi.fpp > > ##SUBS## spancsi_subs.o: spancsi_subs.fpp $(INCL) > ##SUBS## $(fc) $(opt) -c spancsi_subs.fpp > make -f Makefile_linux > gfortran -DLINUX -m32 -O -u -ffixed-line-length-132 -I.. -c spancsi.fpp > spancsi.fpp:69.24: > > call dospan (%val(iaptr),%val(ibptr),%val(idptr), > 1 > Warning: Type mismatch in argument 'mapa' at (1); passed INTEGER(4) to > REAL(4) > gfortran -DLINUX -m32 -O -o spancsi spancsi.o ../gklib/linux_kleylib > ../ccp4libs_latest_m32_linux/libccp4f.a > ../ccp4libs_latest_m32_linux/libccp4c.a ; strip spancsi > cp spancsi /home/dell/Documents/usf/usf_export/bin > cd .. > endif > end > if ( != && != ssencs ) continue > if ( ssencs == gklib || ssencs == bin || ssencs == rave_package ) continue > set ccp4_flag = `echo $prog | grep ccp4` > grep ccp4 > echo ssencs > if ( != ) continue > if ( -d ssencs && -e ssencs/Makefile_linux ) then > echo Building ssencs > Building ssencs > cd ssencs > rm ssencs ssencs.o > cat Makefile_linux > # > OBJ= ssencs.o ../gklib/linux_kleylib > ../ccp4libs_latest_m32_linux/libccp4f.a > ../ccp4libs_latest_m32_linux/libccp4c.a > EXEC = ssencs > INCL= Makefile_linux > SUBS = > STATIC = > ##SUBS## SUBS = ssencs_subs.o > ##INCL## INCL = Makefile_linux ssencs.incl > ##STATIC## STATIC = -static > > fc = gfortran -DLINUX -m32 > > opt= -O -u -ffixed-line-length-132 -I.. > link= -O > > $(EXEC): $(OBJ) $(SUBS) > $(fc) $(link) -o $(EXEC) $(SUBS) $(OBJ) $(STATIC) ; strip $(EXEC) > > ssencs.o: ssencs.fpp $(INCL) > $(fc) $(opt) -c ssencs.fpp > > ##SUBS## ssencs_subs.o: ssencs_subs.fpp $(INCL) > ##SUBS## $(fc) $(opt) -c ssencs_subs.fpp > make -f Makefile_linux > gfortran -DLINUX -m32 -O -u -ffixed-line-length-132 -I.. -c ssencs.fpp > gfortran -DLINUX -m32 -O -o ssencs ssencs.o ../gklib/linux_kleylib > ../ccp4libs_latest_m32_linux/libccp4f.a > ../ccp4libs_latest_m32_linux/libccp4c.a ; strip ssencs > cp ssencs /home/dell/Documents/usf/usf_export/bin > cd .. > endif > end > if ( != && != usf_osx_bin ) continue > if ( usf_osx_bin == gklib || usf_osx_bin == bin || usf_osx_bin == > rave_package ) continue > set ccp4_flag = `echo $prog | grep ccp4` > grep ccp4 > echo usf_osx_bin > if ( != ) continue > if ( -d usf_osx_bin && -e usf_osx_bin/Makefile_linux ) then > echo Building usf_osx_bin > Building usf_osx_bin > cd usf_osx_bin > rm usf_osx_bin usf_osx_bin.o > rm: cannot remove `usf_osx_bin': No such file or directory > rm: cannot remove `usf_osx_bin.o': No such file or directory > cat Makefile_linux > # > OBJ= usf_osx_bin.o ../gklib/linux_kleylib > ../ccp4libs_latest_m32_linux/libccp4f.a > ../ccp4libs_latest_m32_linux/libccp4c.a > EXEC = usf_osx_bin > INCL= Makefile_linux > SUBS = > STATIC = > ##SUBS## SUBS = usf_osx_bin_subs.o > ##INCL## INCL = Makefile_linux usf_osx_bin.incl > ##STATIC## STATIC = -static > > fc = gfortran -DLINUX -m32 > > opt= -O -u -ffixed-line-length-132 -I.. > link= -O > > $(EXEC): $(OBJ) $(SUBS) > $(fc) $(link) -o $(EXEC) $(SUBS) $(OBJ) $(STATIC) ; strip $(EXEC) > > usf_osx_bin.o: usf_osx_bin.fpp $(INCL) > $(fc) $(opt) -c usf_osx_bin.fpp > > ##SUBS## usf_osx_bin_subs.o: usf_osx_bin_subs.fpp $(INCL) > ##SUBS## $(fc) $(opt) -c usf_osx_bin_subs.fpp > make -f Makefile_linux > make: *** No rule to make target `usf_osx_bin.fpp', needed by > `usf_osx_bin.o'. Stop. > cp usf_osx_bin /home/dell/Documents/usf/usf_export/bin > cp: cannot stat `usf_osx_bin': No such file or directory > cd .. > endif > end > if ( != && != voidoo ) continue > if ( voidoo == gklib || voidoo == bin || voidoo == rave_package ) continue > set ccp4_flag = `echo $prog | grep ccp4` > grep ccp4 > echo voidoo > if ( != ) continue > if ( -d voidoo && -e voidoo/Makefile_linux ) then > echo Building voidoo > Building voidoo > cd voidoo > rm voidoo voidoo.o > cat Makefile_linux > # > OBJ= voidoo.o ../gklib/linux_kleylib > ../ccp4libs_latest_m32_linux/libccp4f.a > ../ccp4libs_latest_m32_linux/libccp4c.a > EXEC = voidoo > INCL= Makefile_linux > SUBS = > STATIC = > SUBS = voidoo_subs.o > INCL = Makefile_linux voidoo.incl > ##STATIC## STATIC = -static > > fc = gfortran -DLINUX -m32 > > opt= -O -u -ffixed-line-length-132 -I.. > link= -O > > $(EXEC): $(OBJ) $(SUBS) > $(fc) $(link) -o $(EXEC) $(SUBS) $(OBJ) $(STATIC) ; strip $(EXEC) > > voidoo.o: voidoo.fpp $(INCL) > $(fc) $(opt) -c voidoo.fpp > > voidoo_subs.o: voidoo_subs.fpp $(INCL) > $(fc) $(opt) -c voidoo_subs.fpp > make -f Makefile_linux > gfortran -DLINUX -m32 -O -u -ffixed-line-length-132 -I.. -c voidoo.fpp > gfortran -DLINUX -m32 -O -u -ffixed-line-length-132 -I.. -c voidoo_subs.fpp > gfortran -DLINUX -m32 -O -o voidoo voidoo_subs.o voidoo.o > ../gklib/linux_kleylib ../ccp4libs_latest_m32_linux/libccp4f.a > ../ccp4libs_latest_m32_linux/libccp4c.a ; strip voidoo > cp voidoo /home/dell/Documents/usf/usf_export/bin > cd .. > endif > end > if ( != && != xpand ) continue > if ( xpand == gklib || xpand == bin || xpand == rave_package ) continue > set ccp4_flag = `echo $prog | grep ccp4` > grep ccp4 > echo xpand > if ( != ) continue > if ( -d xpand && -e xpand/Makefile_linux ) then > echo Building xpand > Building xpand > cd xpand > rm xpand xpand.o > cat Makefile_linux > # > OBJ= xpand.o ../gklib/linux_kleylib > ../ccp4libs_latest_m32_linux/libccp4f.a > ../ccp4libs_latest_m32_linux/libccp4c.a > EXEC = xpand > INCL= Makefile_linux > SUBS = > STATIC = > ##SUBS## SUBS = xpand_subs.o > INCL = Makefile_linux xpand.incl > ##STATIC## STATIC = -static > > fc = gfortran -DLINUX -m32 > > opt= -O -u -ffixed-line-length-132 -I.. > link= -O > > $(EXEC): $(OBJ) $(SUBS) > $(fc) $(link) -o $(EXEC) $(SUBS) $(OBJ) $(STATIC) ; strip $(EXEC) > > xpand.o: xpand.fpp $(INCL) > $(fc) $(opt) -c xpand.fpp > > ##SUBS## xpand_subs.o: xpand_subs.fpp $(INCL) > ##SUBS## $(fc) $(opt) -c xpand_subs.fpp > make -f Makefile_linux > gfortran -DLINUX -m32 -O -u -ffixed-line-length-132 -I.. -c xpand.fpp > xpand.fpp:193.5: > > 1990 continue > 1 > xpand.fpp:207.72: > > if (ierr .ne. 0) goto 1990 > 2 > Warning: Label at (1) is not in the same block as the GOTO statement at (2) > xpand.fpp:140.5: > > 1000 continue > 1 > xpand.fpp:211.72: > > if (length(ncsfil) .lt. 1) goto 1000 > 2 > Warning: Label at (1) is not in the same block as the GOTO statement at (2) > xpand.fpp:193.5: > > 1990 continue > 1 > xpand.fpp:231.72: > > if (ierr .ne. 0) goto 1990 > 2 > Warning: Label at (1) is not in the same block as the GOTO statement at (2) > xpand.fpp:193.5: > > 1990 continue > 1 > xpand.fpp:235.72: > > if (ierr .ne. 0) goto 1990 > 2 > Warning: Label at (1) is not in the same block as the GOTO statement at (2) > xpand.fpp:426.5: > > 2990 continue > 1 > xpand.fpp:258.72: > > if (ierr .ne. 0) goto 2990 > 2 > Warning: Label at (1) is not in the same block as the GOTO statement at (2) > xpand.fpp:426.5: > > 2990 continue > 1 > xpand.fpp:267.72: > > if (ierr .ne. 0) goto 2990 > 2 > Warning: Label at (1) is not in the same block as the GOTO statement at (2) > xpand.fpp:426.5: > > 2990 continue > 1 > xpand.fpp:277.72: > > if (ierr .ne. 0) goto 2990 > 2 > Warning: Label at (1) is not in the same block as the GOTO statement at (2) > xpand.fpp:426.5: > > 2990 continue > 1 > xpand.fpp:442.72: > > if (ierr .ne. 0) goto 2990 > 2 > Warning: Label at (1) is not in the same block as the GOTO statement at (2) > xpand.fpp:426.5: > > 2990 continue > 1 > xpand.fpp:447.72: > > if (ierr .ne. 0) goto 2990 > 2 > Warning: Label at (1) is not in the same block as the GOTO statement at (2) > xpand.fpp:426.5: > > 2990 continue > 1 > xpand.fpp:451.72: > > if (ierr .ne. 0) goto 2990 > 2 > Warning: Label at (1) is not in the same block as the GOTO statement at (2) > xpand.fpp:193.5: > > 1990 continue > 1 > xpand.fpp:467.72: > > goto 1990 > 2 > Warning: Label at (1) is not in the same block as the GOTO statement at (2) > gfortran -DLINUX -m32 -O -o xpand xpand.o ../gklib/linux_kleylib > ../ccp4libs_latest_m32_linux/libccp4f.a > ../ccp4libs_latest_m32_linux/libccp4c.a ; strip xpand > cp xpand /home/dell/Documents/usf/usf_export/bin > cd .. > endif > end > if ( != && != xplo2d ) continue > if ( xplo2d == gklib || xplo2d == bin || xplo2d == rave_package ) continue > set ccp4_flag = `echo $prog | grep ccp4` > grep ccp4 > echo xplo2d > if ( != ) continue > if ( -d xplo2d && -e xplo2d/Makefile_linux ) then > echo Building xplo2d > Building xplo2d > cd xplo2d > rm xplo2d xplo2d.o > cat Makefile_linux > # > OBJ= xplo2d.o ../gklib/linux_kleylib > ../ccp4libs_latest_m32_linux/libccp4f.a > ../ccp4libs_latest_m32_linux/libccp4c.a > EXEC = xplo2d > INCL= Makefile_linux > SUBS = > STATIC = > ##SUBS## SUBS = xplo2d_subs.o > ##INCL## INCL = Makefile_linux xplo2d.incl > ##STATIC## STATIC = -static > > fc = gfortran -DLINUX -m32 > > opt= -O -u -ffixed-line-length-132 -I.. > link= -O > > $(EXEC): $(OBJ) $(SUBS) > $(fc) $(link) -o $(EXEC) $(SUBS) $(OBJ) $(STATIC) ; strip $(EXEC) > > xplo2d.o: xplo2d.fpp $(INCL) > $(fc) $(opt) -c xplo2d.fpp > > ##SUBS## xplo2d_subs.o: xplo2d_subs.fpp $(INCL) > ##SUBS## $(fc) $(opt) -c xplo2d_subs.fpp > make -f Makefile_linux > gfortran -DLINUX -m32 -O -u -ffixed-line-length-132 -I.. -c xplo2d.fpp > xplo2d.fpp:3264.469: > > \u0141\U00115186\U09B13EF8\U09C4E140 > > 1 > > > > > > Warning: Extraneous characters in format at (1) > xplo2d.fpp:3272.476: > > > > 1 > > > > > > Warning: Extraneous characters in format at (1) > xplo2d.fpp:3280.483: > > > > 1 > > > > > > Warning: Extraneous characters in format at (1) > xplo2d.fpp:3286.486: > > = list of atoms > > 1 > > > > > > Warning: Extraneous characters in format at (1) > gfortran -DLINUX -m32 -O -o xplo2d xplo2d.o ../gklib/linux_kleylib > ../ccp4libs_latest_m32_linux/libccp4f.a > ../ccp4libs_latest_m32_linux/libccp4c.a ; strip xplo2d > cp xplo2d /home/dell/Documents/usf/usf_export/bin > cd .. > endif > end > goto exit > exit 0 > > I have installed gfortran, could anyone help me ? > By the way, could you give some advice on calculate the size of a pocket in > the inside of a protein ? > Thanks for your attention ! > - -- - -- Dr Tim Gruene Institut fuer anorganische Chemie Tammannstr. 4 D-37077 Goettingen GPG Key ID = A46BEE1A -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.10 (GNU/Linux) Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org/ iD8DBQFO7JdhUxlJ7aRr7hoRAqFpAJ0QYlxeqLpMRgoUSWuABr/37/+i7QCgqMDY BJ3nQ43WW9DZxONJia6X4Vw= =8oRM -----END PGP SIGNATURE-----
