8-Dec-2011 10:40am Dear Bostjan Consurf is also interfaced to Proteopedia, http://www.proteopedia.org, i.e. for all structures that have at least several sequences, one can automatically see an evolutionarily colored 3D Jmol image of the structures by just pushing the ConSurf button. See, e.g. http://proteopedia.org/wiki/index.php/1hho the "STRUCTURE OF HUMAN OXYHAEMOGLOBIN AT 2.1 ANGSTROMS RESOLUTION" by Boaz Shaanan and click on button "Evolutionary conservation: [show]" best regards, Joel On 8 Dec 2011, at 07:39, Bostjan Kobe wrote:
Consurf will do this for you. Bostjan --- Bostjan Kobe NHMRC Research Fellow Professor of Structural Biology School of Chemistry and Molecular Biosciences and Institute for Molecular Bioscience (Division of Chemistry and Structural Biology) and Centre for Infectious Disease Research Cooper Road University of Queensland Brisbane, Queensland 4072 Australia Phone: +61 7 3365 2132 Fax: +61 7 3365 4699 E-mail: b.k...@uq.edu.au<mailto:b.k...@uq.edu.au> URL: http://www.scmb.uq.edu.au/staff/bostjan-kobe Office: Building 76 Room 329 Notice: If you receive this e-mail by mistake, please notify me, and do not make any use of its contents. I do not waive any privilege, confidentiality or copyright associated with it. Unless stated otherwise, this e-mail represents only the views of the Sender and not the views of The University of Queensland. On 8/12/11 3:26 PM, "Yuri Pompeu" <yuri.pom...@ufl.edu<mailto:yuri.pom...@ufl.edu>> wrote: I once saw a figure showing the protein as surface, but instead of having it coloured by atom type or potential, it was shown by percent conservation in the family. Something like red highly conserved, all the way to white, not conserved at all... Now, I assume the figure was done by uploading aligned sequnces of several members of a family, and the colouring the generated surface accordingly. Does anyone know a way to do this more elegantly than what I tried doing? ps. I quit colouring them manually after I remebered my protein was 407 aa long...
