Hi,The protein looks like the letter "C", So in one of the trimer it is arranged
If, in your case, no possible asymmetric unit can contain A1-B2, then
you deposit A1-B1 (or I suppose A2-B2...) and indicate to the PDB (like
placing cards in the header cards) the operator to be used (and the
subunit it applies to) in order to generate the most likely biological
dimer. Normally the PDB can take care of that.
as "C" while in the other trimer (stacked) it is arranged like "inverted C", So
The dimer A1-B1 and A2-B2 are same while A1-B1 and A1-B2 are different.
Thanking you
With Regards
Kavya
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