-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 Dear ,
A PDB file is a coordinate file. The quantities you mention, Rsym, I/sigI, and Redundancy are quantities calculated from the measured data and can therefore not be determined from a PDB file. The PDB file also contains the B-factor, so in order to find out the B-factors of some coordinates in the PDB file, you can open the file with any text editor of your choice and look at its entries. Best wishes, Tim On 10/12/2011 01:53 PM, 王瑞 wrote: > Dear Everybody, > > I am sorry for a little off-topic. Could anyone tell me how to determine > a protein, peptide and ligand of a new pdb's b factor? I know there are > rampage and sfcheck to validate in ccp4, but I only found a overall b factor > in their result. By the way, are there a software to determine a new pdb's > all parameters such as Rsym, I/σ, Redundancy, Solvent molecules' b factors? > > Thanks > - -- - -- Dr Tim Gruene Institut fuer anorganische Chemie Tammannstr. 4 D-37077 Goettingen GPG Key ID = A46BEE1A -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.10 (GNU/Linux) Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org/ iD8DBQFOlY9gUxlJ7aRr7hoRAt4cAKCzxQevEo8lo5oP4kde909nPMcb4QCgvk1u iFnvewprn+436CcS0ThHyZg= =O1Zt -----END PGP SIGNATURE-----
