Another quite powerful tool is ESPript ( http://espript.ibcp.fr/ESPript/ESPript/ ), which takes e.g. clustalw outputs and allows various manipulations (change of colors, add text, secondary structures, etc.)
Matthias ________________________________________ From: CCP4 bulletin board [CCP4BB@JISCMAIL.AC.UK] on behalf of Yuri [yuri.pom...@ufl.edu] Sent: Friday, August 19, 2011 12:31 AM To: CCP4BB@JISCMAIL.AC.UK Subject: [ccp4bb] Sequence Alignment Question Hello Everyone, A little off topic but, what is a good way to show (publication quality) multiple sequence alignment? I am trying to show conserved regions in related proteins from different organisms. Thank you -- Yuri Pompeu
